《2014年》

Ishizuya-Oka A, Kajita M, Hasebe T. Thyroid hormone-regulated Wnt5a/Ror2 signaling is essential for dedifferentiation of larval epithelial cells into adult stem cells in the Xenopus laevis intestine. PLoS One 9: e107611, 2014

Fujii J, Kodama M, Oike A, Matsuo Y, Min MS, Hasebe T, Ishizyya-Oka A, Kawakami K, Nakaura M. Involvement of androgen receptor in sex determination in an amphibian species. PLoS One 9: e93655, 2014

Takaichi S: General methods for identification of carotenoids. Biotechnol Lett 36: 1127-1128, 2014

Yatsunami R, Ando A, Yang Y, Takaichi S, Kohno M, Matsumura Y, Ikeda H, Fukui T, Nakasone K, Fujita N, Sekine M, Takashina T, Nakamura S. Identification of carotenoids from the extremely halophilic archaeon Haloarcula japonica. Front Microbiol: Extreme Microbiol 5: 100, 2014

Nupur P, Srinivas TNR, Takichi S, Anil Kumar P. Rhodovulum mangrovi sp. nov., a phototrophic alphaproteobacterium isolated from a mangrove for- est sediment sample. Int J Syst Evol Microbiol 64: 3168-3173, 2014

Tamiru M, Abe A, Yoshida K, Takagi H, Takagi H, Fujisaki K, Undan J, Rakshit S, Takaichi S, Jikumaru Y, Yokota T, Terry M, Terauchi R. The tillering phenotype of the rice plastid terminal oxidase（PTOX）loss-of-function mutant is associated with strigolactone deficiency. New Phytologist　204: 116-131, 2014

《2013年》

Sun G, Heimeier RA, Fu L, Hasebe T, Das B, Ishizuya-Oka A, Shi Y-B. Expression profiling of intestinal tissues implicates tissue-specific genes and pathways essential for thyroid hormone-induced adult stem cell development. Endocrinology 154:4396-4407, 2013

Miller TC, Sun G, Hasebe T, Fu L, Heimeier RA, Das B, Ishizuya-Oka A, Shi Y-B. Tissue-specific upregulation of MDS/EVI gene transcripts in the intestine by thyroid hormone during Xenopus metamorphosis. PLoS One 8: e55585, 2013

Hasebe T, Fu L, Miller TC, Zhang Y,Shi Y-B, Ishizuya-Oka A. Thyroid hormone-induced cell-cell interactions are required for the development of adult intestinal stem cells. Cell Biosci. 3: 18, 2013

Ishizuya-Oka A, Hasebe T. Establishment of intestinal stem cell niche during amphibian metamorphosis. Curr Top Dev Biol 103: 305-327, 2013

Kim Y, Kim S, Um J, Kim K, Choi S, Um B, Kang S, Kim J, Takaichi S, Song S, Lee C, Kim H, Kim K, Nam K, Lee S, et al. Functional implication of β-carotene hydroxylase in soybean nodulation.　Plant Physiol 162: 1420-1433, 2013

《2012年以前》

Hasebe T, Kajita M, Fu L, Shi Y-B, Ishizuya-Oka A.Thyroid hormone-induced sonic hedgehog signal up-regulates its own pathway in a paracrine manner in the Xenopus laevis intestine during metamorphosis. Dev Dyn 241, 403-414, 2012

Takaichi S, Murakami A, Mochimaru M, Yokoyama A. α-Carotene and its derivatives have a sole chirality in phototrophic organisms?. Acta Biochimi Polon 59: 159-161, 2012

Takaichi S, Sasikala HC, Ramana HC, Okamura K, Hiraishi A. Carotenoids in Rhodoplanes species: variation of compositions and substrate specificity of predicted carotenogenesis enzymes. Curr Microbiol 65: 150-155, 2012

Asao M, Takaichi S, Madigan M. Amino acid-assimilating phototrophic heliobacteria from soda lake environments: Heliorestis acidaminivorans, sp. nov. and ‘Candidatus Heliomonas lunata’. Extremophiles 16:585-595, 2012

Takaichi S, Mochimaru M, Uchida H, Murakami A, Hirose E, Maoka T, Tsuchiya T, Mimuro M. Opposite chilarity of α-carotene in un- usual cyanobacteria with unique chlorophylls, Acaryochloris and Prochlorococcus. Plant Cell Physiol 53: 1881-1888, 2012

Wakahama T, Lazxa-Martinez A, Taha A, Okuyama H, Yoshida, Kogame K, Awai K, Kawachi M, Moka T, Takaichi S. Structural confirmation of a unique carotenoid lactoside, P457, in Symbiodinium sp. strain NBRC 104787 isolated from sea anemone and its distribution in dinoflagellates and various marine organisms. J Phycol 48: 1392-1402, 2012

Wakahama T, Okuyama H, Maoka T, Takaichi S. Unique carotenoid lactoside, P457, in Symbiodinium sp. of dinoflagellate. Acta Biochimi Polon 59: 155-157, 2012

Arima H, Horiguchi N, Takaichi S, Kofuji R, Ishida K, Wada K, Sakamoto T. Molecular genetic and chemotaxonomic characterization of the terrestrial cyanobacterium Nostoc commune and its neighboring species. FEMS Microbiol Ecol 79: 34-45, 2012

Yoshii H, Yoshii Y, Asai T, Furukawa T, Takaichi S, Fujibayashi Y. Photo-excitation of carotenoids causes cytotoxicity via singlet oxygen production. Biochem Biophys Res Commu 412: 640-645, 2012

Hasebe T, Buchholz DR, Shi YB, Ishizuya-Oka A. Epithelial-connective tissue interactions induced by thyroid hormone receptor are essential for adult stem cell development in the Xenopus laevis intestine. Stem Cells 29: 154-161, 2011

Motoi N, Hasebe T, Suzuki K, Ishizuya-Oka A. Spatiotemporal expression profile of no29/nucleophosmin3 in the intestine of Xenopus laevis during metamorphosis. Cell Tissue Res 344: 445-453, 2011

Hasebe T, Kajita M, Iwabuchi M, Ohsumi K, Ishizuya-Oka A. Thyroid hormone-regulated expression of nuclear lamins correlates with dedifferentiation of intestinal epithelial cells during Xenopus laevis metamorphosis. Dev Genes Evol 221: 199-208, 2011

Fujiwara M, Hasebe T, Kajita M, Ishizuya-Oka A, Ghazizadeh M, Kawanami O. RCAN1 regulates vascular branching during Xenopus laevis angiogenesis. J Vasc Res 48: 104-118, 2011

Shi Y-B, Hasebe T, Fu L, Fujimoto K, Ishizuya-Oka A. The development of the adult intestinal stem cells: Insights from studies on thyroid hormone-dependent amphibian metamorphosis. Cell Biosci 1: 30-e9, 2011

Takaichi S, Maoka T, Sasikala C, Ramana C, Shimada K. Genus specific unusual carotenoids in purple bacteria, Phaeospirillum and Roseospira: structures and biosynthesis. Curr Microbiol 63: 75-80, 2011

Lakshmi K, Sasikala C, Takaichi S, Ramana C. Phaeospirillum oryzae sp. nov., a spheroplast-forming, phototrophic alphaproteobacterium from a paddy soil. Int J Syst Evol Microbiol 61: 1656-1661, 2011

Ichinomiya M, Yoshikawa S, Kamiya M, Ohki K, Takaichi S, Kuwata A. Isolation and characterization of Parmales (Heterokonta/ Heterokontophyta/ Stramenopiles) from the Oyashio region, Western North Pacific. J Phycol 47: 144-151, 2011

Sun G, Hasebe T, Fujimoto K, Lu R, Fu L, Matsuda H, Kajita M, Ishizuya-Oka A, Shi Y-B. Spatio-temporal expression profile of stem cell-associated gene LGR5 in the intestine during thyroid hormone- dependent metamorphosis in Xenopus laevis. PLoS One 5: e13605, 2010

Ishizuya-Oka A, Hasebe T, Shi Y-B. Apoptosis in amphibian organs during metamorphosis. Apoptosis 15: 350-364, 2010

Mathew S, Fu L, Hasebe T, Ishizuya-Oka A, Shi Y-B. Tissue-dependent in- duction of apoptosis by matrix metalloproteinase stromelysin-3 during amphibian metamorphosis. Birth Defects Res C Embryo Today 90: 55-66, 2010

Fujisawa T, Narikawa R, Okamoto S, Ehira S, Yoshimura H, Suzuki I, Masuda T, Mochimaru M, Takaichi S, Awai K, Sekine M, Horikawa H, Yashio I, Omata S, Takarada H, et al. Genomic structure of an economically important cyanobacterium, Arthrospira (Spirulina) platensis NIES-39. DNA Res 17: 85-103, 2010

Sucharita K, Shiva Kumar E, Sasikala C, Panda B, Takaichi S, Ramana C. Marichromatium fluminis sp. nov., a slightly alkaliphilic, phototrophic gammaproteobacterium isolated from river sediment. Int J Syst Evol Microbiol 60: 1103-1107, 2010

Venkata Ramana V, Sasikala C, Takaichi S, Ramana C. Roseomonas aestuarii sp. nov., a bacteriochlorophyll-a containing alphaproteobacterium isolated from an estuarine habitat of India. Syst Appl Microbiol 33: 198- 203, 2010

Girija K, Sasikala C, Ramana C, Sproer C, Takaichi S, Thiel V, Imhoff J. Rhodobacter johrii sp. nov., an endospore-producing cryptic species isolated from semi-arid tropical soils. Int J Syst Evol Microbiol 60: 2099-2107, 2010

Ishizuya-Oka A, Hasebe T, Buchholz DR, Kajita M, Fu L, Shi Y-B. The origin of the adult intestinal stem cells induced by thyroid hormone in Xenopus laevis. FASEB J 23: 2568-2575, 2009

Matsuda H, Paul BD, Choi CY, Hasebe T, Shi Y-B. Novel functions of protein arginine methyltransferase 1 in thyroid hormone receptor-mediated transcription and in the regulation of metamor phic rate in Xenopus laevis. Mol Cell Biol 29: 745-757, 2009

Rankin S, Hasebe T, Zorn A, Buchholz D. Improved Cre reporter transgenic Xenopus. Dev Dyn 238: 2401-2408, 2009

Wang Y, Mukhopadhyay D, Mathew S, Hasebe T, Heimeier R, Azuma Y, Kolli N, Shi Y-B, Wilkinson K, Dasso M. Identification and developmental expression of Xenopus laevis SUMO proteases. PLoS One 4: e8462, 2009

Anil Kumar P, Srinivas T, Takaichi S, Maoka T, Sasikala C, Ramana C. Phaeospirillum chandramohanii sp. nov., a phototrophic alphaproteobacterium with carotenoid glycosides. Int J Syst Evol Microbiol 59: 2089-2093, 2009

Kusaba M, Maoka T, Morita R, Takaichi S. A novel carotenoid derivative,lutein3-acetate, accumulatesinsenescentleavesofrice. Plant Cell Physiol 50: 1573- 1577, 2009

Takaichi S, Maoka T, Akimoto N, Takasaki K, Hanada S. Carotenoids of Gemmatimonas aurantiaca (Gemmatimonadetes): identification of a novel carotenoid, deoxyoscillol 2-rhamnoside, and proposed biosynthetic pathway of oscillol 2,2 ’-dirhamnoside. Microbiology 156: 757-763, 2009

Takaichi S, Maoka T, Mochimaru M. Unique carotenoids in the terrestrial cyanobacterium Nostoc commune NIES-24: 2-hydroxymyxol 2 ’-fucoside, nostoxanthin and canthaxanthin. Curr Microbiol 59: 413-419, 2009

Hasebe T, Kajita M, Shi Y-B, Ishizuya-Oka A. Thyroid hormone-upregulated hedgehog interacting protein is involved in larval-to-adult intestinal remodeling by regulating sonic hedgehog signaling pathway in Xenopus laevis. Dev Dyn 237: 3006-3015, 2008

Ishizuya-Oka A, Hasebe T. Sonic hedgehog and bone morphogenetic protein-4 signaling pathway involved in epithelial cell renewal along the radial axis of the intestine. Digestion 77(suppl.1): 42-47, 2008

Ishizuya-Oka A, Shi Y-B. Thyroid-hormone regulation of stem cell development during intestinal remodeling. Mol Cell Endocrinol 288: 71-78, 2008

Takaichi S, Maoka T, Akimoto N, Carmona LM, Yamaoka Y. Carotenoids in a Corynebacterineae, Gordonia terrae AIST-1: carotenoid glucosyl mycoloyl esters. Biochem Biosci Biotechnol 72: 2615-2622, 2008

Akimoto S, Yokono M, Higuchi M, Tomo T, Takaichi S, Murakami A, Mimuro M. Solvent effects on excitation relaxation dynamics of a keto-carotenoid, siphonaxanthin. Photochem Photobiol Sci 7: 1206-1209, 2008

Mochimaru M, Masukawa H, Maoka T, Mohamed EH, Vermaas JW, Takaichi S. Substrate specificities and availability of fucosyltransferase and β-carotene hydroxylase for myxol 2′-fucoside synthesis in Anabaena sp. strain PCC 7120 compared with Synechocystis sp. strain PCC 6803. J Bacteriol 190: 6726-6733, 2008

Iwai M, Maoka T, Ikeuchi M, Takaichi S. 2,2’-β-Hydroxylase (CrtG) is involved in carotenogenesis of both nostoxanthin and 2-hydroxymyxol 2’-fucoside in Thermosynechococcus elongatus strain BP-1. Plant Cell Physiol 49: 1678-1687, 2008

Sandmann G, Takaichi S, Fraser DP. C₃₅- apocarotenoids in the yellow mutant Neurospora crassa YLO. Phytochemistry 69: 2886- 2890, 2008

Makino T, Harada H, Ikenaga H, Matsuda S, Takaichi S, Shindo K, Sandmann G, Ogata T, Misawa N. Characterization of cyanobacterial carotenoid ketolase CrtW and hydroxylase CrtR by complementation analysis in Escherichia coli. Plant Cell Physiol 49: 1867-1878, 2008

Herbert RA, Gall A, Maoka T, Cogdell RJ, Robert B, Takaichi S, Schwabe S. Phototrophic purple sulfur bacteria as heat engines in the South Andros Black Hole. Phytosynth Res 95:261-268, 2008

Khan ST, Takaichi S, Harayama S. Paracoccus marinus sp. nov., an adonixanthin diglucoside-producing bacterium isolated from costal seawater in Tokyo Bay. Int J System Evol Microbiol 58: 383-386, 2008

Ishizuya-Oka A, Shi Y-B. Regulation of adult intestinal epithelial Stem cell development by thyroid hormone during Xenopus laevis metamorphosis. Dev Dyn 236: 3358-3368, 2007

Hasebe T, Kajita M, Fujimoto K, Yaoita Y, Ishizuya-Oka A. Expression profiles of the duplicated matrix metalloproteinase-9 genes suggest their different roles in apoptosis of larval intestinal epithelial cells during Xenopus laevis metamorphosis. Dev Dyn 236: 2338-2345, 2007

Shi Y-B, Fu L, Hasebe T, Ishizuya-Oka A. Regulation of ECM remodeling and cell fate determination by matrix metalloproteinase strmoelysin-3 during thyroid hormone-dependent postembryonic development. Pharmacol & Ther 116: 391-400, 2007

Fu L, Hasebe T, Ishizuya-Oka A, Shi Y-B. Roles of matrix metalloproteinases and ECM remodeling during thyroid hormone-dependent intestinal metamorphosis in Xenopus laevis. Organogenesis 3: 14-19, 2007

Ishizuya-Oka A. Regeneration of the amphibian intestinal epithelium under the control of stem cell niche. Dev Growth Differ 49: 99-107, 2007

Shindo K, Kikuta K, Suzuki A, Katsuta A, Kasai H, Misawa N, Takaichi S. (3R)-Saproxanthin, (3R,2′S)-myxol, and (3R,3′R)-zeaxanthin from three novel marine bacteria (Flavobacteriaceae), and their antioxidant activities. Appl Microbiol Biotechnol 74: 1350-1357, 2007

Suzuki H, Hirano Y, Kumura Y, Takaichi S, Kobayashi M, Miki K, Wang Z-Y. Purification, characterization and crystallization of the core complex from thermophilic purple sulfur bacterium Thermochromatium tepidum. Biochim Biophys Acta 1767: 1057-1063, 2007

Yoshida K, Yoshioka D, Inoue K, Takaichi S, Maeda I. Evaluation of colors in green mutants isolated from purple bacteria as a host for colorimetric whole-cell biosensors. Appl Microbiol Biotechnol 76: 1043-1050, 2007

Asao M, Takaichi S, Madigan M T. Thiocapsa imhoffii, sp. nov., an alkaliphilic purple sulfur bacterium of the family Chromatiaceae from Soap Lake, Washington (USA). Arch Microbiol 188: 665-675, 2007

Okada M, Taniuchi Y, Murakami A, Takaichi S, Ohtake S, Ohki K. Abundance of picophytoplankton in the halocline of meromictic lake, Lake Suigetsu, Japan. Limnology 8: 271-280, 2007

Shindo K, Mikami K, Tamesada E, Takaichi S, Adachi K, Misawa N, Maoka T. Diapolycopenedioic acid xylosyl ester, a novel glyco-C30-carotenoic acid produced by a new marine bacterium Rubritalea squalenifaciens. Tetrahedron Lett 48: 2725-2727, 2007

Sorokin DY, van Pelt S, Tourova TP, Takaichi S, Muyzer G. Acetonitrile degradation under haloalkaline conditions by Natronocella acetinitrilica gen. nov., sp. nov. Microbiology 153: 1157-1164, 2007

Ishizuya-Oka A, Hasebe T, Shimizu K, Suzuki K, Ueda S. Shh/BMP-4 signaling pathway is essential for intestinal epithelial development during Xenopus larval-to-adult remodeling. Dev Dyn 235: 3240-3249, 2006

Takaichi S, Mochimaru M, Maoka T. Presence of free myxol and 4-hydroxymyxol and absence of myxol glycosides in Anabaena variabilis ATCC 29413, and proposal of biosynthetic pathway of carotenoids. Plant Cell Physiol 47: 211-216, 2006

Takaichi S, Maoka T, Akimoto N, Khan ST, Harayama S. Major carotenoid isolated from Paracoccus schoinia NBRC 100637T is adonixanthin diglucoside. J Nat Prod 69: 1823-1825, 2006

Ikuzawa M, Shimizu K, Yasumasu S, Iuchi I, Shi Y-B, Ishizuya-Oka A. Thyroid hormone-induced expression of a bZip-containing transcription factor activates epithelial cell proliferation during Xenopus larval-to-adult intestinal remodeling. Dev Genes Evol 216:109-118, 2005

Fu L, Ishizuya-Oka A, Buchholz DR, Amano T, Shi Y-B. A causative role of stromelysin-3 in ECM remodeling and epithelial apoptosis during intestinal metamorphosis in Xenopus laevis. J Biol Chem 280: 27856-27865, 2005

Ishizuya-Oka A, Shi Y-B. Molecular mechanisms for thyroid hormone-induced remodeling in the amphibian digestive tract: a model for studying organ regeneration. Dev Growth Differ 47: 601-607, 2005

Banciu H, Sorokin DY, Rijpstra WIC, Damste JSS, Galinski EA, Takaichi S, Muyzer G, Kuenen JG. Fatty acid, compatible solute and pigment composition of obligately chemolithoautotrophic alkaliphilic sulfur-oxidizing bacteria from soda lakes. FEMS Microbiol Lett 243: 181-187, 2005

Takaichi S, Mochimaru M, Maoka T, Katoh H. Myxol and 4-ketomyxol 2，-fucosides, not rhamnosides, from Anabaena sp. PCC 7120 and Nostoc punctiforme PCC 73102, and proposal for the biosynthetic pathway of carotenoids. Plant Cell Physiol 46: 497-504, 2005

Tsuchiya T, Takaichi S, Misawa N, Maoka T, Miyashita H, Mimuro M. The cyanobacterium Gloeobacter violaceus PCC 7421 uses bacterial-type phytoene desaturase in carotenoid biosynthesis. FEBS Lett 579: 2125-2129, 2005.

Gall A, Henry S, Takaichi S, Robert B, Cogdell Rj. Preferential incorporation of coloured-carotenoids occurs in the LH2 complexes from non-sulphur purple bacteria under carotenoid-limiting conditions. Photosynth Res 86: 25-35, 2005

Maeda I, Yamashiro H, Yoshioka D, Onodera M, Ueda S, Miyasaka H, Umeda F, Kawase M, Takaichi S, Yagi K. Unusual accumulation of demethylspheroidene in anaerobic-phototrophic growth of crtA-deleted mutants of Rhodovulum sulfidophilum. Current Microbiol 51: 193-197, 2005

Yoshii Y, Takaichi S, Maoka T, Suda S, Sekiguchi H, Nakayama T, Inouye I. Variation of siphonaxanthin series among the genus Nephroselmis (Prasinophyceae, Chlorophyta), including a novel primary methoxy carotenoid. J Phycol 41: 827-834, 2005

Mochimaru M, Masukawa H, Takaichi S. The cyanobacterium Anabaena sp. PCC 7120 has two distinct b-carotene ketolases: CrtO for echinenone and CrtW for ketomyxol synthesis. FEBS Lett 579: 6111-6114, 2005

Tojo M, Nishitani S. The effects of the smut fungus Microbotryum bistortarum on survival and growth of Polygonum viviparum in Svalbard, Norway. Can J Bot 83: 1513-1517, 2005

Buchholz DR, Ishizuya-Oka A, Shi Y-B. Spatial and temporal expression pattern of a novel gene in the frog Xenopus laevis: correlations with adult intestinal epithelial differentiation during metamorphosis. Gene Express Patt 4: 321-328, 2004

Akimoto S, Yamazaki I, Murakami A, Takaichi S, Mimuro M. Ultrafast excitation relaxation dynamics and energy transfer in the siphonaxanthin- containing green alga Codium fragile. Chem Phys Lett 390: 45-49, 2004

Jung DO, Achenbach LA, Kar EA, Takaichi S, Madigan MT. A gas vesiculate planktonic strain of the purple-nonsulfur bacterium Rhodoferax antarcticus isolated from Lake Fryxell, Dry Valleys, Antarctica. Arch Microbiol 182: 236-243, 2004

Takaichi S, Maoka T, Akimoto N, Sorokin D, Banciu H, Kuenen JG. Two novel yellow pigments natronochrome and chloronatronochrome from the natrono(alkali)philic sulfur-oxidizing bacterium Thialkalivibrio versutus strain ALJ 15. Tetrahedron Lett 45: 8303-8305, 2004

Yatsunami R, Takaichi S, Nakamura S. Isolation of crtI homolog from extremely halophilic archaeon Haloarcula japonica strain TR-1. Nucleic Acids Symposium Series 48: 193-194, 2004